Welcome to my home page

I am an Assistant Professor with the Department of Computer Science at the University of Colorado, Colorado Springs . My research interests are in the following areas:

Specifically, I focus on the research projects such as genome 3D structure prediction, chromosome and genome features extraction, and the application of machine learning algorithms to biological datasets. My work featured on the News
Click on this link to see details about my research group, Bioinformatics Lab.

I developed a software app, called EyeCYou, that uses AI to provide the facial description of a person to the visually impaired. Find details here: EyeCYou for the visually impaired

Connect with me here: Google Scholar, ResearchGate, LinkedIn, PubMed, Semantic scholar

Awards and Grants
Selected Publications
  • Hovenga, V., Kalita, J., & Oluwadare, O. (2023). HiC-GNN: A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks. Computational and Structural Biotechnology Journal, 2023 Jan 1;21:812-36. [@ Computational and Structural Biotechnology Journal.][Funding: NSF]

  • Hicks, P., & Oluwadare, O. (2022). HiCARN:Resolution Enhancement of Hi-C Data Using Cascading Residual Network. Bioinformatics. https://doi.org/10.1093/bioinformatics/btac156 [@ Bioinformatics] [@ Won 2nd Place at 2022 President's Academic Showcase at Concordia University Irvine]

  • Higgins, S., Akpokiro, V., Westcott, A. & Oluwadare, O.(2022). TADMaster: a comprehensive web-based tool for the analysis of topologically associated domains. BMC Bioinformatics 23, 463 (2022) .https://doi.org/10.1186/s12859-022-05020-2. [@ BMC Bioinformatics]

  • Akpokiro, V., Martin, T. & Oluwadare, O.(2022). EnsembleSplice: Ensemble Learning Model for Splice Site Prediction. BMC Bioinformatics 23, 413 (2022) . https://doi.org/10.1186/s12859-022-04971-w. [@ BMC Bioinformatics][Funding: NSF]

  • Oluwadare, O., Max Highsmith, Douglass Turner, Erez Lieberman-Aiden & Jianlin Cheng. (2020) GSDB: : a database of 3D chromosome and genome structures reconstructed from Hi-C data. BMC Mol and Cell Biol 21, 60. [ @ BMC Mol and Cell Biol ] (First database public repository of 3D chromosome and genome structures )

  • Oluwadare, O., Highsmith, M. and Cheng, J. (2019). An Overview of Methods for Reconstructing 3-D Chromosome and Genome Structures from Hi-C Data. Biological Procedures Online 21.1 2019:7. [@ Biological Procedures Online]

  • Contact
    Email:    [email protected]
    Phone:   719-255-3004
    Office:    Engineering Building - ENG 244
    Research Sponsors: NSF Logo NSF Logo